Illumina BeadChip Probe Reannotation
ReMOAT (Re-annotation and Mapping of Oligonucleotide Array Technologies) is a web-based interface to the re-annotation data generated by our pipeline.
Reference
Barbosa-Morais NL, Dunning MJ, Samarajiwa SA, Darot JFJ, Ritchie ME, Lynch AG, Tavaré S. "A re-annotation pipeline for Illumina BeadArrays: improving the interpretation of gene expression data". Nucleic Acids Research, 2009 Nov 18, doi:10.1093/nar/gkp942
Annotation tables for download
Version 1.0.0 (August 2009)
A full description of the tables and database versions is here.
Human
Human WG version 3 (HumanWG-6_V3_0_R0_11282955_A) against Human Mar. 2006 (hg18) assembly (including controls) [ZIP of TXT (tab delimited) and GFF] (already on ReMOAT!)
Human WG version 2 (Human_6_V2_11223189_B) against Human Mar. 2006 (hg18) assembly (including controls) [ZIP of TXT (tab delimited) and GFF]
Human WG version 1 (Human_WG-6) against Human Mar. 2006 (hg18) assembly [ZIP of TXT (tab delimited) and GFF]
Human DASL against Human Mar. 2006 (hg18) assembly [ZIP of TXT (tab delimited) and GFF]
Mouse
Mouse WG version 2 (MouseWG-6_V2_0_R0_11278593_A) against Mouse July 2007 (mm9) assembly (including controls) [ZIP of TXT (tab delimited) and GFF] (already on ReMOAT!)
Mouse WG version 1.1 (MouseWG-6_V1_1_R2_11234304_A) against Mouse July 2007 (mm9) assembly (including controls) [ZIP of TXT (tab delimited) and GFF]
Mouse WG version 1 (Mouse-6_V1) against Mouse July 2007 (mm9) assembly [ZIP of TXT (tab delimited) and GFF]
Rat
Rat RefSeq version 1 (RatRef-12_V1_0_R2_11222119_A) against Rat Nov. 2004 (rn4) assembly (including controls) [ZIP of TXT (tab delimited) and GFF] (already on ReMOAT!)
Test version Mar'09
A full description of the tables is here.
Human
Human WG version 3 (HumanWG-6_V3_0_R0_11282955_A) against Human Mar. 2006 (hg18) assembly (including controls) [ZIP of TXT (tab delimited) and GFF]
Human WG version 1 (Human_WG-6) against Human Mar. 2006 (hg18) assembly [ZIP of TXT (tab delimited) and GFF]
Mouse
Mouse WG version 2 (MouseWG-6_V2_0_R0_11278593_A) against Mouse July 2007 (mm9) assembly (including controls) [ZIP of TXT (tab delimited)]
Test version Feb'09
Human
Human WG version 2 (Human_6_V2_11223189_B) against Human Mar. 2006 (hg18) assembly (including controls) [ZIP of TXT (tab delimited) and GFF]
Human DASL against Human Mar. 2006 (hg18) assembly [ZIP of TXT (tab delimited) and GFF]
Rat
Rat RefSeq version 1 (RatRef-12_V1_0_R2_11222119_A) against Rat Nov. 2004 (rn4) assembly (including controls) [ZIP of TXT (tab delimited) and GFF]
Test version Nov'08
Human
Human WG version 2 (Human_6_V2_11223189_B) against Human Mar. 2006 (hg18) assembly (excluding controls) [TXT (tab delimited)]
Human WG version 2 (Human_6_V2_11223189_B) against Human Mar. 2006 (hg18) assembly (controls only) [TXT (tab delimited)]
Mouse
Mouse WG version 1.1 (MouseWG-6_V1_1_R2_11234304_A) against Mouse July 2007 (mm9) assembly (including controls) [ZIP of TXT (tab delimited)]
Mouse WG version 1 (Mouse-6_V1) against Mouse July 2007 (mm9) assembly [ZIP of TXT (tab delimited)]
Old version (Mar'08)
Mouse
Mouse WG version 1.1 (Mouse-6_v1_1_11234304_A) against Mouse Feb. 2006 (mm8) assembly [TXT (tab delimited)] [XLS (Excel)]
Mouse WG version 1 (Mouse-6_V1) against Mouse Feb. 2006 (mm8) assembly [TXT (tab delimited)] [XLS (Excel)]
Human-Mouse cross-annotation
Human WG version 2 (Human_6_V2_11223189_B) against Mouse Feb. 2006 (mm8) assembly [TXT (tab delimited)] [XLS (Excel)]
Human WG version 1 (Human_WG-6) against Mouse Feb. 2006 (mm8) assembly [TXT (tab delimited)] [XLS (Excel)]
Mouse WG version 1.1 (Mouse-6_v1_1_11234304_A) against Human Mar. 2006 (hg18) assembly [TXT (tab delimited)] [XLS (Excel)]
Mouse WG version 1 (Mouse-6_V1) against Human Mar. 2006 (hg18) assembly [TXT (tab delimited)] [XLS (Excel)]
Note: in the tables linked above, columns with header ending by zero correspond to the original Illumina annotation.
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