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2008

  • Dimas AS, Stranger BE, Beazley C, Finn RD, Ingle CE, Forrest MS, Ritchie ME, Deloukas P, Tavaré S, Dermitzakis ET. Exploring epistatic effects between regulatory and protein-coding variation PLoS Genet 2008 Oct;4(10):e1000244. Epub 2008 Oct 31 [pubmed]
  • Cairns JM, Dunning MJ, Ritchie ME, Russell R, Lynch AG. BASH: A tool for managing BeadArray spatial artefacts Bioinformatics Oct 25 Epub ahead of print [pubmed]
  • Wilson MD, Barbosa-Morais NL, Schmidt D, Conboy CM, Vanes L, Tybulewicz VLJ, Fisher EMC, Tavaré S, Odom DT. Species-specific transcription in mice carrying human chromosome 21 Science 2008 Oct 17;322(5900):434-8 [pubmed]
  • Down TA, Rakyan VK, Turner DJ, Flicek P, Li H, Kulesha E, Gräf S, Johnson N, Herrero J, Tomazou EM, Thorne NP, Bäckdahl L, Herberth M, Howe KL, Jackson DK, Miretti MM, Marioni JC, Birney E, Hubbard TJ, Durbin R, Tavaré S, Beck S. A Bayesian deconvolution strategy for immunoprecipitation-based DNA methylome analysis Nat Biotechnol 2008 Jul;26(7):779-85 [pubmed]
  • Rakyan VK, Down TA, Thorne NP, Flicek P, Kulesha E, Gräf S, Tomazou EM, Bäckdahl L, Johnson N, Herberth M, Howe KL, Jackson DK, Miretti MM, Fiegler H, Marioni JC, Birney E, Hubbard TJ, Carter NP, Tavaré S, Beck S. An integrated resource for genome-wide identification and analysis of human tissue-specific differentially methylated regions (tDMRs) Genome Res 2008 Sep;18(9):1518-29 [pubmed]
  • Fanshawe TR, Lynch AG, Ellis IO, Green AR, Hanka R. Assessing agreement between multiple raters with missing rating information, applied to breast cancer tumour grading PLoS ONE 3(8) [pubmed]
  • Marioni JC, White M, Tavaré S, Lynch AG. Hidden copy number variation in the HapMap population, PNAS 105 (29) 10067-10072 [pubmed]
  • Das PP, Bagijn MP, Goldstein LD, Woolford JR, Lehrbach NJ, Sapetschnig A, Buhecha HR, Gilchrist MJ, Howe KL, Stark R, Matthews N, Berezikov E, Ketting RF, Tavaré S, Miska EA. Piwi and piRNAs Act Upstream of an Endogenous siRNA Pathway to Suppress Tc3 Transposon Mobility in the Caenorhabditis elegans Germline. Mol Cell. 2008 doi.10.1016/j.molcel.2008.06.003 [publisher online]
  • Dunning MJ, Ritchie ME, Barbosa-Morais NL, Tavaré S, Lynch AG. Spike-in validation of an Illumina-specific variance-stabilizing transformation. BMC Research Notes, 2008 1:18 [publisher online]
  • Palmer RD, Barbosa-Morais NL, Gooding EL, Muralidhar B, Thornton CM, Pett MR, Roberts I, Schneider DT, Thorne N, Tavaré S, Nicholson JC, Coleman N; On behalf of The Childrens Cancer and Leukaemia Group (CCLG). Pediatric malignant germ cell tumours show characteristic transcriptome profiles, Cancer Research, 2008 Jun 1;68(11):4239-47 [pubmed]
  • Dunning MJ, Barbosa-Morais NL, Lynch AG, Tavaré S, Ritchie ME. Statistical issues in the analysis of Illumina data. BMC Bioinformatics 2008 9:85 [publisher online]