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2009

  • Curtis C, Lynch AG, Dunning MJ, Spiteri I, Marioni JC, Hadfield J, Chin SF, Brenton J, Tavaré S, & Caldas C. The pitfalls of platform comparison: A comparison of DNA copy-number platforms. BMC Genomics, 8; 10(1):588, 2009. [pubmed]
  • Spyrou C, Stark R, Lynch AG, Tavaré S. BayesPeak: Bayesian analysis of ChIP-seq data.. BMC Bioinformatics, 2009 10:299
  • Whiteford N, Skelly T, Curtis C, Ritchie M, Lohr A, Wait Zaranek A, Abnizova I, Brown C. Swift: Primary Data Analysis for the Illumina Solexa Sequencing Platform. Bioinformatics, 2009;25(17):2194-2199. [pubmed]
  • Tiemann-Boege I, Curtis C, Shinde DS, Goodman DB, Tavaré S, & Arnheim N. New developments in the amplification of millions of single molecules in parallel in micro PCR reactors. Journal of Analytical Chemistry, 2009;81(14):5770-5776. [pubmed]
  • Dunning AM, Healey CS, BaynesC, Maia AT, Scollen S, Vega A, Rodriguez R, Barbosa-Morais NL, Ponder BAJ, et al. Association of ESR1 gene tagging SNPs with breast cancer risk. Human Molecular Genetics, 2009 Mar 15;18(6):1131-9. [pubmed]
  • Lynch AG, Dunning MJ, Iddawela M, Barbosa-Morais NL, Ritchie ME. Considerations for the processing and analysis of GoldenGate-based two-colour Illumina platforms. Statistical Methods in Medical Research, 2009 Jan 19 [Epub ahead of print]. [pubmed]
  • Thorne NP, Marioni JC, Rakyan V, Ibrahim AEK, Massie C, Curtis C, Brenton JD, Murrell A, & Tavaré S. DNA methylation arrays: Methods and Analysis. In Microarray Innovations - Technology and Experimentation in Drug Discovery and Biomedical Research, Ed. G. Hardiman. DNA Press, Chapter 13:175-206, 2009. [pdf]