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Supplementary Material

  • Cairns et al, Quantifying the impact of inter site heterogeneity on the distribution of ChIP-seq data
    [Scripts]
  • Curtis et al, The genomic and transcriptomic architecture of 2,000 breast tumours reveals novel subgroups
    [Scripts and data]
  • Smith et al, Identification and correction of previously unreported spatial phenomena using raw Illumina BeadArray data
    [Scripts and data]
  • Barbosa-Morais et al, A re-annotation pipeline for Illumina BeadArrays: improving the interpretation of gene expression data
    [Data]
  • Dunning et al, Spike-in validation of an Illumina-specific variance-stabilizing transformation
    [Data and R scripts]
  • Marioni et al, Hidden copy number variation in the HapMap trios.
    [Data and R scripts]
  • Dunning et al, Statistical issues in the analysis of Illumina data
    [Data, supplementary plots and R scripts]
  • Marioni et al, Breaking the waves: improved detection of copy number variation from microarray-based comparative genomic hybridization
    [Data and resources]
  • Lynch et al, Numbers of Copy-Number Variations and False-Negative Rates Will Be Underestimated If We Do Not Account for the Dependence between Repeated Experiments
    [Data and resources]
  • Marioni et al, BioHMM: a heterogeneous hidden Markov model for segmenting array CGH data
    [Data and resources]